A Time-Structured Look at the M2K1 Malaria Atlas with IRIS
A visualization experiment using IRIS to redraw the PfM2K1 single-cell malaria atlas around supplied pseudotime.
Blog .
Posts about what I am building, learning, and thinking through in bioinformatics and research.
ESM & the Protein Landscape
Following protein-language-model-guided evolutionary trajectories to understand why some searches reach their targets while others get stuck.
Notes: How Plasmodium Invades Red Blood Cells (and Then Hides)
Receptor binding, antigenic variation, and dry-season persistence in Plasmodium.
A String of A’s and the End That Started Everything
How mapping soybean mRNA 3′ ends led me to Nextflow, Docker, and my first research pipeline.